Nextflow Registry | Nextflow Modules

Nextflow Modules

Showing module(s) with keyword "aDNA"

Module	Keywords	Description
nf-core/amps	malt MaltExtract HOPS amps alignment metagenomics ancient DNA aDNA palaeogenomics archaeogenomics microbiome authentication damage edit distance post Post-processing visualisation	Post-processing script of the MaltExtract component of the HOPS package
nf-core/damageprofiler	damage deamination miscoding lesions C to T ancient DNA aDNA palaeogenomics archaeogenomics palaeogenetics archaeogenetics	A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
nf-core/malt/build	malt alignment metagenomics ancient DNA aDNA palaeogenomics archaeogenomics microbiome database	MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.
nf-core/maltextract	malt MaltExtract HOPS alignment metagenomics ancient DNA aDNA palaeogenomics archaeogenomics microbiome authentication damage edit distance	Tool for evaluation of MALT results for true positives of ancient metagenomic taxonomic screening
nf-core/malt/run	malt alignment metagenomics ancient DNA aDNA palaeogenomics archaeogenomics microbiome	MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.
nf-core/multivcfanalyzer	vcf ancient DNA aDNA SNP GATK UnifiedGenotyper SNP table	SNP table generator from GATK UnifiedGenotyper with functionality geared for aDNA
nf-core/pmdtools/filter	pmdtools aDNA filter damage	pmdtools command to filter ancient DNA molecules from others
nf-core/pydamage/analyze	ancient DNA aDNA de novo assembly filtering damage deamination miscoding lesions C to T palaeogenomics archaeogenomics palaeogenetics archaeogenetics	Damage parameter estimation for ancient DNA
nf-core/pydamage/filter	ancient DNA aDNA de novo assembly filtering damage deamination miscoding lesions C to T palaeogenomics archaeogenomics palaeogenetics archaeogenetics	Damage parameter estimation for ancient DNA