|
nf-core/amps
|
malt
MaltExtract
HOPS
amps
alignment
metagenomics
ancient DNA
aDNA
palaeogenomics
archaeogenomics
microbiome
authentication
damage
edit distance
post Post-processing
visualisation
|
Post-processing script of the MaltExtract component of the HOPS package
|
|
nf-core/authentict/deam2cont
|
authentict
ancientDNA
single-stranded
deamination
contamination
damage
|
Use deamination patterns to estimate contamination in single-stranded libraries
|
|
nf-core/damageprofiler
|
damage
deamination
miscoding lesions
C to T
ancient DNA
aDNA
palaeogenomics
archaeogenomics
palaeogenetics
archaeogenetics
|
A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
|
|
nf-core/maltextract
|
malt
MaltExtract
HOPS
alignment
metagenomics
ancient DNA
aDNA
palaeogenomics
archaeogenomics
microbiome
authentication
damage
edit distance
|
Tool for evaluation of MALT results for true positives of ancient metagenomic taxonomic screening
|
|
nf-core/mapad/map
|
mapad
ancient dna
adna
damage
deamination
miscoding lesions
c to t
palaeogenomics
archaeogenomics
palaeogenetics
archaeogenetics
short-read
align
aligner
alignment
map
mapper
mapping
reference
fasta
fastq
bam
cram
|
Map short-reads to an indexed reference genome
|
|
nf-core/pmdtools/filter
|
pmdtools
aDNA
filter
damage
|
pmdtools command to filter ancient DNA molecules from others
|
|
nf-core/pydamage/analyze
|
ancient DNA
aDNA
de novo assembly
filtering
damage
deamination
miscoding lesions
C to T
palaeogenomics
archaeogenomics
palaeogenetics
archaeogenetics
|
Damage parameter estimation for ancient DNA
|
|
nf-core/pydamage/filter
|
ancient DNA
aDNA
de novo assembly
filtering
damage
deamination
miscoding lesions
C to T
palaeogenomics
archaeogenomics
palaeogenetics
archaeogenetics
|
Damage parameter estimation for ancient DNA
|