Nextflow Registry | nf-core/quantmsutils/diann2mztab@0.0.0-6c4ed3a

nf-core/quantmsutils/diann2mztab @ 0.0.0-6c4ed3a

Convert DIA-NN results to mzTab, MSstats, and Triqler formats using quantms-utils

quantms-utils diann mztab msstats triqler proteomics

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @daichengxin @wanghong @pinin4fjords

Maintainers: @daichengxin @pinin4fjords

Convert DIA-NN results to mzTab, MSstats, and Triqler formats using quantms-utils

Add the following snippet to your workflow script to include this module.

include { QUANTMSUTILS_DIANN2MZTAB } from 'nf-core/quantmsutils/diann2mztab'

MIT License

Process

`Name`	`QUANTMSUTILS_DIANN2MZTAB`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', name:'test', condition:'test' ]
`report` file	DIA-NN main report file (tsv or parquet) `*.{tsv,parquet}`
`report_pg` file	DIA-NN protein group matrix file `*.tsv`
`report_pr` file	DIA-NN precursor matrix file `*.tsv`
`diann_version` string	DIA-NN version
`exp_design` file	Experimental design file describing sample conditions `*.tsv`
`ms_information` file	MS statistics/information files in parquet format `*.parquet`
`fasta` file	FASTA database file used for the search `*.{fasta,fa}`

Output 5 channels

#1 log tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', name:'test', condition:'test' ]
`*.log` file	Log file from conversion process `*.log`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

#3 out_mztab tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', name:'test', condition:'test' ]
`*.mzTab` file	mzTab output file (standard proteomics exchange format) `*.mzTab`

#4 out_msstats tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', name:'test', condition:'test' ]
`*msstats_in.csv` file	MSstats input file for statistical analysis `*msstats_in.csv`

#5 out_triqler tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', name:'test', condition:'test' ]
`*triqler_in.tsv` file	Triqler input file for protein quantification with uncertainty `*triqler_in.tsv`

Tool	Description	Homepage
quantms-utils	quantms-utils is a Python package for proteomics data processing	https://github.com/bigbio/quantms-utils

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:39:21 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fquantmsutils%2Fdiann2mztab/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/quantmsutils/diann2mztab/blobs/sha256:d7d818c798b7baf31ae0f06d19b940c7a41b0201ab0cee15d442910d24dfe438
Size	3.1 KB
Checksum	sha256:d7d818c798b7baf31ae0f06d19b940c7a41b0201ab0cee15d442910d24dfe438
Downloads	3

Version	Date