Nextflow Modules
Showing module(s) with keyword "quantms-utils"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/dia_proteomics_analysis | Workflow | diann proteomics dia quantification spectral library quantms-utils | Complete DIA-NN proteomics analysis pipeline including in-silico library generation, preliminary analysis, empirical library assembly, individual analysis, and final quantification. This subworkflow combines DIA-NN modules with quantms-utils for comprehensive data-independent acquisition (DIA) proteomics data processing. |
| nf-core/quantmsutils/diann2mztab | Process | quantms-utils diann mztab msstats triqler proteomics | Convert DIA-NN results to mzTab, MSstats, and Triqler formats using quantms-utils |
| nf-core/quantmsutils/dianncfg | Process | quantms-utils diann configuration enzyme modifications | Generate DIA-NN configuration arguments from enzyme and Unimod modification parameters. This module uses quantms-utils to convert enzyme and modification specifications into DIA-NN-compatible command-line arguments. Only supports Unimod modifications. For custom modifications, pass arguments directly to the DIANN module. |
| nf-core/quantmsutils/mzmlstatistics | Process | quantms-utils mzml statistics proteomics mass spectrometry | Generate statistics from mzML files using quantms-utils |