nf-core/quantmsutils/dianncfg @ 0.0.0-3fc6d40
Summary
Generate DIA-NN configuration arguments from enzyme and Unimod modification parameters. This module uses quantms-utils to convert enzyme and modification specifications into DIA-NN-compatible command-line arguments. Only supports Unimod modifications. For custom modifications, pass arguments directly to the DIANN module.
Get started
Add the following snippet to your workflow script to include this module.
include { QUANTMSUTILS_DIANNCFG } from 'nf-core/quantmsutils/dianncfg'
License
MIT License
Name
|
QUANTMSUTILS_DIANNCFG |
|---|
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
enzyme
string
|
Enzyme name for protein digestion (e.g., 'Trypsin', 'Trypsin/P') .*
|
fixed_modifications
string
|
Fixed modifications in Unimod format (e.g., 'Carbamidomethyl (C)') .*
|
variable_modifications
string
|
Variable modifications in Unimod format (e.g., 'Oxidation (M)') .*
|
log
*.log
file
|
Log file from configuration generation *.log
|
|---|
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
diann_cfg
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
diann_config.cfg
file
|
DIA-NN configuration file containing command-line arguments diann_config.cfg
|
| Tool | Description | Homepage |
|---|---|---|
| quantms-utils | quantms-utils is a Python package with scripts and functions for quantitative proteomics data analysis. The dianncfg command converts enzyme and modification parameters to DIA-NN-compatible format. | https://github.com/bigbio/quantms-utils |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:28:09 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fquantmsutils%2Fdianncfg/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/quantmsutils/dianncfg/blobs/sha256:899816369491787b8d55de43ca7e7e1949ca3215e76a7c78b8679c4cc7244e53 |
| Size | 2.7 KB |
| Checksum | sha256:899816369491787b8d55de43ca7e7e1949ca3215e76a7c78b8679c4cc7244e53 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:39:22 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:28:09 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:29:52 (UTC) | 3 | 2.7 KB |