Nextflow Registry | nf-core/ribotish/quality@0.0.0-3fc6d40

nf-core/ribotish/quality @ 0.0.0-3fc6d40

Quality control of riboseq bam data

riboseq quality bam

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @pinin4fjords

Maintainers: @pinin4fjords

Quality control of riboseq bam data

Add the following snippet to your workflow script to include this module.

include { RIBOTISH_QUALITY } from 'nf-core/ribotish/quality'

MIT License

Process

`Name`	`RIBOTISH_QUALITY`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`bam` file	Sorted BAM/CRAM/SAM file `*.{bam}`
`bai` file	Index for sorted BAM/CRAM/SAM file `*.{bai}`

#2 tuple

`meta2` map	Groovy Map containing reference information e.g. `[ id:'Ensembl human v.111' ]`
`gtf` file	GTF-format annotation file for reference sequences used in the bam file `*.gtf`

Output 4 channels

#1 pdf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.pdf` file	Pdf figure file is plot of all the distributions and illustration of quality and P-site offset `*.{pdf}`

#2 offset tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.para.py` file	This file saves P-site offsets for different reads lengths in python code dict format, and can be used in further analysis `*.{para.py}`

#3 versions

`versions.yml` file	File containing software versions `versions.yml`

#4 distribution tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.txt` file	file containing distribution `*.{txt}`

Tool	Description	Homepage
ribotish	Ribo TIS Hunter (Ribo-TISH) identifies translation activities using ribosome profiling data.	https://github.com/zhpn1024/ribotish

Version	0.0.0-3fc6d40
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	22 Apr 2026 15:29:03 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fribotish%2Fquality/0.0.0-3fc6d40/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ribotish/quality/blobs/sha256:a44a4b012b52bf461f7efc8100db0e79bcf430dc8373e8f0624830283b389724
Size	2.8 KB
Checksum	sha256:a44a4b012b52bf461f7efc8100db0e79bcf430dc8373e8f0624830283b389724
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:40:58 (UTC)	3	2.8 KB
0.0.0-3fc6d40	22 Apr 2026 15:29:03 (UTC)	3	2.8 KB
0.0.0-0c7146d	08 Apr 2026 19:31:43 (UTC)	3	2.8 KB