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Showing module(s) with keyword "quality"

Module Keywords Description
nf-core/checkm2/databasedownload checkm mag metagenome quality completeness contamination bins CheckM2 database download
nf-core/checkm2/predict checkm mag metagenome quality completeness contamination bins CheckM2 bin quality prediction
nf-core/checkm/lineagewf checkm mag metagenome quality isolates microbes single cells completeness contamination bins genome bins CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes.
nf-core/checkm/qa checkm mag metagenome quality isolates microbes single cells completeness contamination bins genome bins qa quality assurnce CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes.
nf-core/checkv/downloaddatabase checkv checkm mag metagenome quality isolates virus completeness contamination download database Construct the database necessary for checkv's quality assessment
nf-core/checkv/endtoend checkv checkm mag metagenome quality isolates virus completeness contamination Assess the quality of metagenome-assembled viral genomes.
nf-core/checkv/updatedatabase checkv checkm mag metagenome quality isolates virus completeness contamination Construct the database necessary for checkv's quality assessment
nf-core/merfin/hist assembly evaluation quality completeness Compare k-mer frequency in reads and assembly to devise the metrics K* and QV*
nf-core/picard/collecthsmetrics alignment metrics statistics insert hybrid-selection quality bam Collects hybrid-selection (HS) metrics for a SAM or BAM file.
nf-core/picard/collectmultiplemetrics alignment metrics statistics insert quality bam Collect multiple metrics from a BAM file
nf-core/picard/collectrnaseqmetrics rna bam metrics alignment statistics quality Collect metrics from a RNAseq BAM file
nf-core/picard/collectwgsmetrics alignment metrics statistics quality bam Collect metrics about coverage and performance of whole genome sequencing (WGS) experiments.
nf-core/quast quast assembly quality contig scaffold Quality Assessment Tool for Genome Assemblies
nf-core/ribotish/quality riboseq quality bam Quality control of riboseq bam data