Nextflow Registry | nf-core/rnaquast@0.0.0-6c4ed3a

nf-core/rnaquast @ 0.0.0-6c4ed3a

Assess the quality of an RNAseq assembly with or without a reference genome

rna assembly rnaseq de novo quality control

Latest version: 0.0.0-6c4ed3a

Total downloads: 10

Source: nf-core/modules

Authors: @vagkaratzas

Maintainers: @vagkaratzas

Assess the quality of an RNAseq assembly with or without a reference genome

Add the following snippet to your workflow script to include this module.

include { RNAQUAST } from 'nf-core/rnaquast'

MIT License

Process

`Name`	`RNAQUAST`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`fasta` file	Specifies the transcriptome assembly FASTA file(s) to be evaluated. `*.{fasta,fa}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`reference` file	Provides the reference genome FASTA file against which transcripts will be aligned. `*.{fasta,fa}`

#3 tuple

`meta3` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`gtf` file	Supplies the reference gene annotation file in GTF format for evaluating transcript accuracy and completeness. `*.{gff,gtf}`

Output 2 channels

#1 results tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ] `${prefix}`
`${prefix}` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ] `${prefix}`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
rnaquast	rnaQUAST is a tool for evaluating RNA-Seq assemblies using reference genome and gene database. In addition, rnaQUAST is also capable of estimating gene database coverage by raw reads and de novo quality assessment using third-party software.	https://github.com/ablab/rnaquast

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:41:05 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Frnaquast/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/rnaquast/blobs/sha256:b05a4d9dfa4c0e054e818f7da7c37b4e735982c0492e751b70d2722b458451f3
Size	3.5 KB
Checksum	sha256:b05a4d9dfa4c0e054e818f7da7c37b4e735982c0492e751b70d2722b458451f3
Downloads	4

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:41:05 (UTC)	4	3.5 KB
0.0.0-3fc6d40	22 Apr 2026 15:29:09 (UTC)	3	3.5 KB
0.0.0-0c7146d	08 Apr 2026 19:31:54 (UTC)	3	3.5 KB