nf-core/saltshaker/plot @ 0.0.0-6c4ed3a
Summary
mtDNA deletion and duplication plotting downstream of mitosalt
Get started
Add the following snippet to your workflow script to include this module.
include { SALTSHAKER_PLOT } from 'nf-core/saltshaker/plot'
License
MIT License
Process
Name
|
SALTSHAKER_PLOT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
classify
file
|
classify metadata file from saltshaker_classify *_classify_metadata.tsv
|
Output
2 channels
#1
plot
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*saltshaker.png
file
|
png file with saltshaker plot *saltshaker.png
|
#2
versions_saltshaker
tuple
${task.process}
string
|
The name of the process |
|---|---|
saltshaker
string
|
The name of the tool |
1.0.0
string
|
Hardcoded version of saltshaker used in the module |
| Tool | Description | Homepage |
|---|---|---|
| saltshaker | A Python package for classifying and visualizing mitochondrial structural variants from MitoSAlt pipeline output. | https://github.com/aksenia/saltshaker |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:41:51 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsaltshaker%2Fplot/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/saltshaker/plot/blobs/sha256:1bd1a38bc1c03ffde179678b3a96579b74551c20697d2e14ff334e19d6f5fcd1 |
| Size | 2.5 KB |
| Checksum | sha256:1bd1a38bc1c03ffde179678b3a96579b74551c20697d2e14ff334e19d6f5fcd1 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:41:51 (UTC) | 4 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:32:59 (UTC) | 3 | 2.5 KB |