nf-core/sentieon/bwaindex @ 0.0.0-0c7146d
Summary
Create BWA index for reference genome
Get started
Add the following snippet to your workflow script to include this module.
include { SENTIEON_BWAINDEX } from 'nf-core/sentieon/bwaindex'
License
MIT License
Process
Name
|
SENTIEON_BWAINDEX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing reference information. e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Input genome fasta file |
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing reference information. e.g. [ id:'test', single_end:false ] |
|---|---|
bwa
file
|
BWA genome index files *.{amb,ann,bwt,pac,sa}
|
#2
versions_sentieon
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
sentieon
string
|
The tool name |
sentieon driver --version | sed "s/.*-//g"
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| sentieon | Sentieon® provides complete solutions for secondary DNA/RNA analysis for a variety of sequencing platforms, including short and long reads. Our software improves upon BWA, STAR, Minimap2, GATK, HaplotypeCaller, Mutect, and Mutect2 based pipelines and is deployable on any generic-CPU-based computing system. | https://www.sentieon.com/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:35:38 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsentieon%2Fbwaindex/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/sentieon/bwaindex/blobs/sha256:26c5f73d787def4da1760fb08c877a204dbe1673cdec67ddeeedc6c7068bb5c3 |
| Size | 2.9 KB |
| Checksum | sha256:26c5f73d787def4da1760fb08c877a204dbe1673cdec67ddeeedc6c7068bb5c3 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:43:52 (UTC) | 4 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:35:38 (UTC) | 3 | 2.9 KB |