nf-core/seqwish/induce @ 0.0.0-0c7146d
Summary
Induce a variation graph in GFA format from alignments in PAF format
Get started
Add the following snippet to your workflow script to include this module.
include { SEQWISH_INDUCE } from 'nf-core/seqwish/induce'
License
MIT License
Process
Name
|
SEQWISH_INDUCE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
paf
list
|
comma-separated PAF file(s) of alignments, single entry allowed [*.{paf,paf.gz},*.{paf,paf.gz},...]
|
fasta
file
|
FASTA file used to generate alignments *.{fa,fa.gz,fasta,fasta.gz}
|
Output
2 channels
#1
gfa
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.gfa
file
|
Variation graph in GFA 1.0 format *.{gfa}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| seqwish | seqwish implements a lossless conversion from pairwise alignments between sequences to a variation graph encoding the sequences and their alignments. | https://github.com/ekg/seqwish |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:37:22 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fseqwish%2Finduce/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/seqwish/induce/blobs/sha256:9fb9c0de41fd4c3fca1a83f0bc5a06f4e5cd4e387628e1cc10e2c142261a5fcd |
| Size | 2.5 KB |
| Checksum | sha256:9fb9c0de41fd4c3fca1a83f0bc5a06f4e5cd4e387628e1cc10e2c142261a5fcd |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:44:59 (UTC) | 2 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:30:53 (UTC) | 2 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:37:22 (UTC) | 3 | 2.5 KB |