nf-core/shinyngs/staticdifferential @ 0.0.0-6c4ed3a
Summary
Make plots for interpretation of differential abundance statistics
Get started
Add the following snippet to your workflow script to include this module.
include { SHINYNGS_STATICDIFFERENTIAL } from 'nf-core/shinyngs/staticdifferential'
License
MIT License
Name
|
SHINYNGS_STATICDIFFERENTIAL |
|---|
meta
map
|
Groovy Map containing contrast information, to be passed as reference and target levels, like '--reference_level $meta.reference --treatment_level $meta.target' e.g. [ variable:'treatment', reference:'treated', control:'saline', blocking:'' ] |
|---|---|
differential_result
file
|
statistic differential results |
meta2
map
|
Groovy Map containing information on experiment represented by max, features and samples, at a minimum an id. e.g. [ id:'test' ] |
|---|---|
sample
file
|
CSV or TSV-format sample sheet with sample metadata |
feature_meta
file
|
CSV or TSV-format feature (e.g. gene) metadata |
assay_file
file
|
CSV or TSV matrix file to use alongside differential statistics in interpretation. Usually a normalised form. |
volcanos_png
tuple
meta
map
|
Groovy Map containing contrast information e.g. [ variable:'treatment', reference:'treated', control:'saline', blocking:'' ] |
|---|---|
*/png/volcano.png
file
|
Meta-keyed tuple containing a PNG output for a volcano plot built from the differential result table. |
volcanos_html
tuple
meta
map
|
Groovy Map containing contrast information e.g. [ variable:'treatment', reference:'treated', control:'saline', blocking:'' ] |
|---|---|
*/html/volcano.html
file
|
Meta-keyed tuple containing an HTML output for a volcano plot built from the differential result table. |
versions_shinyngs
tuple
${task.process}
string
|
The name of the process |
|---|---|
shinyngs
string
|
The name of the tool |
Rscript -e "library(shinyngs); cat(as.character(packageVersion('shinyngs')))"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| shinyngs | Provides Shiny applications for various array and NGS applications. Currently very RNA-seq centric, with plans for expansion. | https://github.com/pinin4fjords/shinyngs |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:46:04 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fshinyngs%2Fstaticdifferential/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/shinyngs/staticdifferential/blobs/sha256:15c4784f73950d362487a5b31512ca5f36c97e60d6fce06277479b8a4e20a010 |
| Size | 3.5 KB |
| Checksum | sha256:15c4784f73950d362487a5b31512ca5f36c97e60d6fce06277479b8a4e20a010 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:46:04 (UTC) | 4 | 3.5 KB | |
| 0.0.0-f484e07 | 17 Apr 2026 15:00:15 (UTC) | 3 | 3.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:37:48 (UTC) | 4 | 3.5 KB |