nf-core/skani/sketch @ 0.0.0-0c7146d
Summary
Storing skani sketches/indices on disk.
Get started
Add the following snippet to your workflow script to include this module.
include { SKANI_SKETCH } from 'nf-core/skani/sketch'
License
MIT License
Process
Name
|
SKANI_SKETCH |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
Input FASTA file to be sketched *.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
|
Output
4 channels
#1
sketch
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/${fasta}.sketch
file
|
File containing the genome sketch that will be used downstream. |
#2
markers
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/markers.bin
file
|
Sparse set of markers to filter distant genomes. |
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#4
sketch_dir
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}
directory
|
Directory containing the genome sketches and markers. |
| Tool | Description | Homepage |
|---|---|---|
| skani | skani is a fast and robust tool for calculating ANI between metagenome assembled genomes and contigs. | https://github.com/bluenote-1577/skani |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:38:13 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fskani%2Fsketch/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/skani/sketch/blobs/sha256:5cb6addc24b7b49cb39142295b60f47583b09c2f82b0dd2f4b8b6b38d65c35a0 |
| Size | 2.4 KB |
| Checksum | sha256:5cb6addc24b7b49cb39142295b60f47583b09c2f82b0dd2f4b8b6b38d65c35a0 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:46:20 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:32:00 (UTC) | 4 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:38:13 (UTC) | 3 | 2.4 KB |