nf-core/smoothxg @ 0.0.0-0c7146d
Summary
Linearize and simplify variation graph in GFA format using blocked partial order alignment
Get started
Add the following snippet to your workflow script to include this module.
include { SMOOTHXG } from 'nf-core/smoothxg'
License
MIT License
Process
Name
|
SMOOTHXG |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gfa
file
|
Variation graph in GFA 1.0 format *.{gfa}
|
Output
3 channels
#1
gfa
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*smoothxg.gfa
file
|
Linearized and simplified graph in GFA 1.0 format *.smoothxg.{gfa}
|
#2
maf
*.maf
file
|
write the multiple sequence alignments (MSAs) in MAF format in this file (optional) *.{maf}
|
|---|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| smoothxg | smoothxg linearizes and simplifies variation graphs using blocked partial order alignment. | https://github.com/pangenome/smoothxg |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:39:09 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsmoothxg/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/smoothxg/blobs/sha256:487ac93f1b229da06b797339cf18db54565dd4195e2a06403143d01319621673 |
| Size | 2.4 KB |
| Checksum | sha256:487ac93f1b229da06b797339cf18db54565dd4195e2a06403143d01319621673 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:46:29 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:32:09 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:39:09 (UTC) | 4 | 2.4 KB |