nf-core/sourmash/compare @ 0.0.0-6c4ed3a
Summary
Compare many FracMinHash signatures generated by sourmash sketch.
Get started
Add the following snippet to your workflow script to include this module.
include { SOURMASH_COMPARE } from 'nf-core/sourmash/compare'
License
MIT License
Name
|
SOURMASH_COMPARE |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
signatures
file
|
Files containing signatures (hash sketches) of samples *.{sig}
|
file_list
file
|
An optional file specifying a list of file paths that should be appended to the input signatures. |
|---|
save_numpy_matrix
boolean
|
If true, output will contain a (dis)similarity matrix numpy binary format. At least one of save_numpy_matrix or save_csv is required. |
|---|
save_csv
boolean
|
If true, output will contain a (dis)similarity matrix in CSV format At least one of save_numpy_matrix or save_csv is required. |
|---|
csv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*comp.csv
file
|
An optional (dis)similarity matrix in CSV format *.comp.csv
|
labels
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*comp.npy.labels.txt
file
|
A text file that specifies the labels in the output numpy_matrix *.comp.labels.txt
|
matrix
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*comp.npy
file
|
An optional (dis)similarity matrix numpy binary format *.comp
|
versions_sourmash
tuple
${task.process}
string
|
The name of the process |
|---|---|
sourmash
string
|
The name of the tool |
sourmash --version 2>&1 | sed 's/^sourmash //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| sourmash | Compute and compare FracMinHash signatures for DNA and protein data sets. | https://sourmash.readthedocs.io/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:46:57 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsourmash%2Fcompare/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/sourmash/compare/blobs/sha256:3b444cd6050012d632dcf6571dd7b664f1f9ee46cadbcd25ae3d9295476fc3e1 |
| Size | 3.0 KB |
| Checksum | sha256:3b444cd6050012d632dcf6571dd7b664f1f9ee46cadbcd25ae3d9295476fc3e1 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:46:57 (UTC) | 3 | 3.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:32:24 (UTC) | 3 | 3.1 KB | |
| 0.0.0-f7a55a7 | 09 Apr 2026 15:00:52 (UTC) | 3 | 3.0 KB | |
| 0.0.0-0c7146d |