nf-core/sourmash/taxannotate @ 0.0.0-0c7146d
Summary
Annotate list of metagenome members (based on sourmash signature matches) with taxonomic information.
Get started
Add the following snippet to your workflow script to include this module.
include { SOURMASH_TAXANNOTATE } from 'nf-core/sourmash/taxannotate'
License
MIT License
Name
|
SOURMASH_TAXANNOTATE |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gather_results
file
|
Mandatory table with signatures classified as belonging to any of the genomes in the sourmash database(s), result of |
taxonomy
file
|
One or more databases with lineages (in CSV format, Mandatory) |
|---|
result
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.with-lineages.csv.gz
file
|
Table with signatures classified as belonging to any of the genomes in the sourmash database(s) with an additional 'lineage' column containing the taxonomic information for each database match. *{csv.gz}
|
versions_sourmash
tuple
${task.process}
string
|
The name of the process |
|---|---|
sourmash
string
|
The name of the tool |
sourmash --version 2>&1 | sed 's/^sourmash //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| sourmash | Compute and compare FracMinHash signatures for DNA data sets. | https://sourmash.readthedocs.io/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:39:58 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsourmash%2Ftaxannotate/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/sourmash/taxannotate/blobs/sha256:79a14da0f3e7efd487d948bbe7175567dde6b003b2887eddc7c09453fee493dd |
| Size | 3.0 KB |
| Checksum | sha256:79a14da0f3e7efd487d948bbe7175567dde6b003b2887eddc7c09453fee493dd |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:47:02 (UTC) | 3 | 2.9 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:32:29 (UTC) | 3 | 3.0 KB | |
| 0.0.0-f7a55a7 | 09 Apr 2026 15:00:57 (UTC) | 3 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:39:58 (UTC) | 4 | 3.0 KB |