Nextflow Registry | nf-core/sushie@0.0.0-f7a55a7

nf-core/sushie @ 0.0.0-f7a55a7

Software to perform multi-ancestry SNP fine-mapping on molecular data

gwas fine mapping ancestry

Latest version: 0.0.0-3fc6d40

Total downloads: 6

Source: nf-core/modules

Authors: @camlloyd

Maintainers: @camlloyd

Software to perform multi-ancestry SNP fine-mapping on molecular data

Add the following snippet to your workflow script to include this module.

include { SUSHIE } from 'nf-core/sushie'

MIT License

Process

`Name`	`SUSHIE`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`study_locus_files` file	Study locus file(s) `*.gwas`

`ld_files` file	LD file(s) `*.ld`

`sample_sizes` string	Sample size(s)

Output 5 channels

#1 cs tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.sushie.cs.tsv.gz` file	Credible set `*.sushie.cs.tsv.gz`

#2 log tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.log` file	Log file `*.log`

#3 corr tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.sushie.corr.tsv.gz` file	Effect size correlation `*.sushie.corr.tsv.gz`

#4 weights tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.sushie.weights.tsv.gz` file	Prediction weights `*.sushie.weights.tsv.gz`

#5 versions_sushie tuple

`${task.process}` string	The name of the process
`sushie` string	The name of the tool
`0.19` string	The expression to obtain the version of the tool

Tool	Description	Homepage
sushie	Software to perform multi-ancestry SNP fine-mapping on molecular data	https://github.com/mancusolab/sushie/

Version	0.0.0-f7a55a7
Commit ID	3fc6d40d163d89ae44d40a00b9017d5a9df5170e
Release Date	09 Apr 2026 15:00:59 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fsushie/0.0.0-f7a55a7/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/sushie/blobs/sha256:b28bb014400669d5a24d945cc7fe28addfd6c5879ec855beaeed1b046efb0d4e
Size	2.9 KB
Checksum	sha256:b28bb014400669d5a24d945cc7fe28addfd6c5879ec855beaeed1b046efb0d4e
Downloads	3

Version	Date	Status	Downloads	Size
0.0.0-3fc6d40	22 Apr 2026 15:33:04 (UTC)		3	2.9 KB
0.0.0-f7a55a7	09 Apr 2026 15:00:59 (UTC)		3	2.9 KB