Nextflow Modules
Showing module(s) with keyword "ancestry"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/admixture | Process | ancestry population genetics admixture reference panels gwas | ADMIXTURE is a program for estimating ancestry in a model-based manner from large autosomal SNP genotype datasets, where the individuals are unrelated (for example, the individuals in a case-control association study). |
| nf-core/somalier/ancestry | Process | relatedness QC bam cram vcf gvcf ancestry identity kinship informative sites family | Somalier can extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF or from jointly-called VCFs |
| nf-core/somalier/extract | Process | relatedness QC bam cram vcf gvcf ancestry identity kinship informative sites family | Somalier can extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF or from jointly-called VCFs |
| nf-core/somalier/relate | Process | relatedness QC bam cram vcf gvcf ancestry identity kinship informative sites family | Somalier can extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF or from jointly-called VCFs |
| nf-core/sushie | Process | gwas fine mapping ancestry | Software to perform multi-ancestry SNP fine-mapping on molecular data |