Nextflow Modules
Showing module(s) with keyword "gwas"
| Module | Keywords | Description |
|---|---|---|
| nf-core/admixture | ancestry population genetics admixture reference panels gwas | ADMIXTURE is a program for estimating ancestry in a model-based manner from large autosomal SNP genotype datasets, where the individuals are unrelated (for example, the individuals in a case-control association study). |
| nf-core/regenie/runl0 | regenie gwas genome-wide association study association genomics parallel | Run one REGENIE step 1 level-0 job from a split master file |
| nf-core/regenie/splitl0 | regenie gwas genome-wide association study association genomics parallel | Split REGENIE step 1 level-0 ridge-regression blocks into parallel jobs |
| nf-core/regenie/step1 | regenie gwas association burden test genomics | Run REGENIE step 1 to fit whole-genome regression models and emit LOCO predictions |
| nf-core/regenie/step2 | regenie gwas genome-wide association study association burden test genomics | Run REGENIE step 2 association testing from precomputed step 1 predictions |
| nf-core/scoary | gwas pangenome prokaryote | Use pangenome outputs for GWAS |
| nf-core/sushie | gwas fine mapping ancestry | Software to perform multi-ancestry SNP fine-mapping on molecular data |