nf-core/tabix/bgzip @ 0.0.0-6c4ed3a
Summary
Compresses/decompresses files
Get started
Add the following snippet to your workflow script to include this module.
include { TABIX_BGZIP } from 'nf-core/tabix/bgzip'
License
MIT License
Process
Name
|
TABIX_BGZIP |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input
file
|
file to compress or to decompress |
Output
3 channels
#1
gzi
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.gzi
file
|
Optional gzip index file for compressed inputs *.gzi
|
#2
output
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${output}
file
|
Output compressed/decompressed file *.
|
#3
versions_tabix
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
tabix
string
|
The tool name |
tabix -h 2>&1 | grep -oP 'Version:\s*\K[^\s]+'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bgzip | Bgzip compresses or decompresses files in a similar manner to, and compatible with, gzip. | https://www.htslib.org/doc/tabix.html |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:49:12 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ftabix%2Fbgzip/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/tabix/bgzip/blobs/sha256:56569e22a1c8c234158540b0baf24fdc3f3d090981abd710880b7e6d74ba09f6 |
| Size | 3.2 KB |
| Checksum | sha256:56569e22a1c8c234158540b0baf24fdc3f3d090981abd710880b7e6d74ba09f6 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:49:12 (UTC) | 2 | 3.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:42:47 (UTC) | 3 | 3.2 KB |