Nextflow Modules
Showing module(s) with keyword "bgzip"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/fasta_bgzip_index_dict_samtools | Workflow | bgzip faidx dict fasta | Ensure BGZF compression, index, and produce a sequence size summary and a sequence dictionary for each FASTA file. |
| nf-core/grabix/check | Process | compression bgzip grabix | Checks if the input file is bgzip compressed or not |
| nf-core/htslib/bgziptabix | Process | compress decompress index bgzip tabix gzip bzip xz | Multi-purpose module to compress, decompress and index files using bgzip and tabix. |
| nf-core/samtools/bgzip | Process | compression fasta gff vcf bed BGZF gzip bgzip | DEPRECATED. Use HTSLIB/BGZIPTABIX instead. Converts an arbitrary compressed or uncompressed file to BGZIP |
| nf-core/sgdemux | Process | demultiplex fastq bgzip | Demultiplex bgzip'd fastq files |
| nf-core/tabix/bgzip | Process | compress decompress bgzip tabix | DEPRECATED. Use HTSLIB/BGZIPTABIX instead. Compresses/decompresses files |
| nf-core/tabix/bgziptabix | Process | bgzip compress index tabix vcf | DEPRECATED. Use HTSLIB/BGZIPTABIX instead. bgzip a sorted tab-delimited genome file and then create tabix index |