nf-core/tidk/search @ 0.0.0-0c7146d
Summary
Searches a genome for a telomere string such as TTAGGG
Get started
Add the following snippet to your workflow script to include this module.
include { TIDK_SEARCH } from 'nf-core/tidk/search'
License
MIT License
Process
Name
|
TIDK_SEARCH |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
The input fasta file *.{fsa,fa,fasta}
|
string
string
|
Search string such as TTAGGG |
|---|
Output
3 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.tsv
file
|
Search results in TSV format *.tsv
|
#2
bedgraph
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.bedgraph
file
|
Search results in BEDGRAPH format *.bedgraph
|
#3
versions_tidk
tuple
${task.process}
string
|
The name of the process |
|---|---|
tidk
string
|
The name of the tool |
tidk --version | sed 's/tidk //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| tidk | tidk is a toolkit to identify and visualise telomeric repeats in genomes | https://github.com/tolkit/telomeric-identifier |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | be790aafaa178554b403f862164eb27042f0b35a |
| Release Date | 08 Apr 2026 19:43:49 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ftidk%2Fsearch/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/tidk/search/blobs/sha256:3bcf5e20d575edba8b7de3e1a50d696dcf13927b4771615e4f0fc4d03ac0fdeb |
| Size | 2.5 KB |
| Checksum | sha256:3bcf5e20d575edba8b7de3e1a50d696dcf13927b4771615e4f0fc4d03ac0fdeb |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-be790aa | 24 Apr 2026 15:01:07 (UTC) | 3 | 2.6 KB | |
| 0.0.0-6c4ed3a | 23 Apr 2026 15:49:54 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:34:31 (UTC) | 4 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:43:49 (UTC) | 3 | 2.5 KB |