Nextflow Modules
Showing module(s) with keyword "telomere"
| Module | Keywords | Description |
|---|---|---|
| nf-core/custom/summarisetelomereestimation | telomere summary telseq telogator2 telomerehunter | Normalise and combine telomere length and content estimates from telseq, telogator2, and telomerehunter into a unified summary |
| nf-core/telogator2 | bam cram genomics telomere long-read pacbio nanopore | Allele-specific telomere length estimation and TVR characterization from long reads |
| nf-core/telomerehunter | bam genomics telomere telomerehunter cancer | In silico estimation of telomere content and composition from cancer genomes |
| nf-core/telseq | bam cram genomics samtools telomere telseq | Telseq: a software for calculating telomere length |
| nf-core/tidk/explore | genomics telomere search | `tidk explore` attempts to find the simple telomeric repeat unit in the genome provided. It will report this repeat in its canonical form (e.g. TTAGG -> AACCT). |
| nf-core/tidk/plot | genomics telomere search plot | Plots telomeric repeat frequency against sliding window location using data produced by `tidk/search` |
| nf-core/tidk/search | genomics telomere search | Searches a genome for a telomere string such as TTAGGG |