nf-core/trinity @ 0.0.0-3fc6d40
Summary
Assembles a de novo transcriptome from RNAseq reads
Get started
Add the following snippet to your workflow script to include this module.
include { TRINITY } from 'nf-core/trinity'
License
MIT License
Process
Name
|
TRINITY |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input fasta/fastq reads to be assembled into a transcriptome. *.{fa,fasta,fq,fastq}
|
Output
3 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
Log from trinity *.log
|
#2
transcript_fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fa.gz
file
|
de novo assembled transcripts fasta file compressed *.fa.gz
|
#3
versions_trinity
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
trinity
string
|
The tool name |
Trinity --version | grep 'Trinity version' | sed 's/.*Trinity-v//'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| trinity | Trinity assembles transcript sequences from Illumina RNA-Seq data. | https://github.com/trinityrnaseq/trinityrnaseq/wiki |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:34:49 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ftrinity/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/trinity/blobs/sha256:afbaa7ebb02685b0aa064b2f50415c16b801f094e0ff4e5818122bad99fd9851 |
| Size | 3.1 KB |
| Checksum | sha256:afbaa7ebb02685b0aa064b2f50415c16b801f094e0ff4e5818122bad99fd9851 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:50:12 (UTC) | 1 | 3.1 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:34:49 (UTC) | 1 | 3.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:44:16 (UTC) | 1 | 3.1 KB |