nf-core/ucsc/bedtobigbed @ 0.0.0-3fc6d40
Summary
Convert file from bed to bigBed format
Get started
Add the following snippet to your workflow script to include this module.
include { UCSC_BEDTOBIGBED } from 'nf-core/ucsc/bedtobigbed'
License
MIT License
Process
Name
|
UCSC_BEDTOBIGBED |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
bed file *.{bed}
|
sizes
file
|
chromosome sizes file *.{sizes}
|
|---|
autosql
file
|
autoSql file to describe the columns of the BED file *.{as}
|
|---|
Output
2 channels
#1
bigbed
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bigBed
file
|
bigBed file *.{bigBed}
|
#2
versions_ucsc
tuple
${task.process}
string
|
The name of the process |
|---|---|
ucsc
string
|
The name of the tool |
482
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ucsc | Convert file from bed to bigBed format | http://hgdownload.cse.ucsc.edu/admin/exe/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:35:04 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fucsc%2Fbedtobigbed/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ucsc/bedtobigbed/blobs/sha256:2391953d0c2b87e8ddae6626d80f339c1a0d1c5477c8cb6e3d3e7036ed657b2a |
| Size | 2.6 KB |
| Checksum | sha256:2391953d0c2b87e8ddae6626d80f339c1a0d1c5477c8cb6e3d3e7036ed657b2a |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:50:26 (UTC) | 2 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:35:04 (UTC) | 2 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:44:37 (UTC) | 4 | 2.5 KB |