nf-core/vembrane/filter @ 0.0.0-3fc6d40
Summary
Filter VCF files with vembrane
Get started
Add the following snippet to your workflow script to include this module.
include { VEMBRANE_FILTER } from 'nf-core/vembrane/filter'
License
MIT License
Process
Name
|
VEMBRANE_FILTER |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
vcf
file
|
Path to the VCF/BCF file to be filtered. e.g. 'file.vcf', 'file.vcf.gz', 'file.bcf', 'file.bcf.gz' *.{vcf,bcf,vcf.gz,bcf.gz}
|
expression
string
|
The filter expression can be any valid python expression that evaluates to a value of type bool. e.g. 'ANN["SYMBOL"] == "CDH2"' |
|---|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.{vcf,bcf,bcf.gz}
file
|
Filtered VCF output file *.{vcf,bcf,bcf.gz}
|
#2
versions_vembrane
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
vembrane
string
|
The tool name |
vembrane --version | sed '1!d;s/.* //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| vembrane | Filter VCF/BCF files with Python expressions. | https://github.com/vembrane/vembrane/tree/main |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:36:13 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fvembrane%2Ffilter/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/vembrane/filter/blobs/sha256:24f833fa378e7daa8fb4f9369ec1222ebe5185212e2c2d89eb1c8b05b39bcf97 |
| Size | 2.8 KB |
| Checksum | sha256:24f833fa378e7daa8fb4f9369ec1222ebe5185212e2c2d89eb1c8b05b39bcf97 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:52:19 (UTC) | 3 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:36:13 (UTC) | 4 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:46:37 (UTC) | 3 | 2.8 KB |