Nextflow Modules
Showing module(s) with keyword "SNP"
| Module | Keywords | Description |
|---|---|---|
| nf-core/cellsnp/modea | genotyping single cell SNP droplet based single cells | Cellsnp-lite is a C/C++ tool for efficient genotyping bi-allelic SNPs on single cells. You can use the mode A of cellsnp-lite after read alignment to obtain the snp x cell pileup UMI or read count matrices for each alleles of given or detected SNPs for droplet based single cell data. |
| nf-core/freebayes | variant caller SNP genotyping somatic variant calling germline variant calling bacterial variant calling bayesian | A haplotype-based variant detector |
| nf-core/multivcfanalyzer | vcf ancient DNA aDNA SNP GATK UnifiedGenotyper SNP table | SNP table generator from GATK UnifiedGenotyper with functionality geared for aDNA |
| nf-core/parsnp | alignment bacteria phylogeny microbial genomics core genome SNP | Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection. |