Nextflow Modules
Showing module(s) with keyword "base quality score recalibration"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/gatk4/applybqsr | Process | bam base quality score recalibration bqsr cram gatk4 | Apply base quality score recalibration (BQSR) to a bam file |
| nf-core/gatk4/baserecalibrator | Process | base quality score recalibration table bqsr gatk4 sort | Generate recalibration table for Base Quality Score Recalibration (BQSR) |
| nf-core/gatk4/gatherbqsrreports | Process | base quality score recalibration bqsr gatherbqsrreports gatk4 | Gathers scattered BQSR recalibration reports into a single file |
| nf-core/gatk4spark/applybqsr | Process | bam base quality score recalibration bqsr cram gatk4spark | Apply base quality score recalibration (BQSR) to a bam file |
| nf-core/gatk4spark/baserecalibrator | Process | base quality score recalibration table bqsr gatk4spark sort | Generate recalibration table for Base Quality Score Recalibration (BQSR) |
| nf-core/parabricks/applybqsr | Process | bqsr bam GPU-accelerated base quality score recalibration | NVIDIA Clara Parabricks GPU-accelerated apply Base Quality Score Recalibration (BQSR). |
| nf-core/sentieon/qualcal | Process | base quality score recalibration bqsr sentieon | Generate recalibration table and optionally perform base quality recalibration |