Nextflow Modules
Showing module(s) with keyword "hifi"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/canu | Process | Assembly pacbio hifi nanopore | Accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads. |
| nf-core/hifiadapterfilt/downloaddb | Process | pacbio hifi adapter blast database download | Downloads the pre-built PacBio adapter BLAST database from the HiFiAdapterFilt GitHub repository. The database contains two adapter sequences: NGB00972.1 (Pacific Biosciences Blunt Adapter, 45 bp) and NGB00973.1 (C2 Primer, 35 bp). This module is consumed by hifiadapterfilt/hifiadapterfilt as a prerequisite to provide the BLAST database for adapter detection. |
| nf-core/hifiadapterfilt/hifiadapterfilt | Process | pacbio hifi adapter filtering long reads ccs | Remove adapter sequences from PacBio HiFi (CCS) reads using BLAST-based detection. Produces filtered FASTQ output, filtering statistics, BLAST hits, and a list of blocked read IDs. |
| nf-core/kivvi | Process | kivvi genotyper tandem repeat vntr hifi | Calls copy number and sequence variants in large-unit variable number tandem repeats from PacBio HiFi reads |