Nextflow Modules
Showing module(s) with keyword "cellbender"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| cellgeni/cellbender/qc | Process | cellbender single-cell RNA-seq quality control ambient RNA | Collects summary statistics from CellBender outputs and produces a QC report directory with PDF plots and per-sample RDS summaries. |
| cellgeni/cellbender/removebackground | Process | cellbender single-cell RNA-seq ambient RNA empty droplets artifact removal | Removes ambient RNA and empty droplet artifacts from single-cell RNA-seq data using CellBender, producing a per-sample output directory with filtered count matrices. |
| nf-core/h5ad_removebackground_barcodes_cellbender_anndata | Workflow | scdownstream cellbender anndata | Use cellbender for empty droplet removal |