Nextflow Modules
Showing module(s) with keyword "cellbender"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| cellgeni/cellbender/qc | Process | cellbender single-cell quality control multiqc | Collects QC statistics from CellBender 0.2 and 0.3 remove-background outputs into a summary TSV, a multi-page PDF (training curves, CellBender-style cell calling, latent PCA, soup fractions and per-gene removal) and MultiQC custom content. |
| cellgeni/cellbender/removebackground | Process | cellbender single-cell RNA-seq ambient RNA empty droplets artifact removal | Removes ambient RNA and empty droplet artifacts from single-cell RNA-seq data using CellBender, producing a per-sample output directory with filtered count matrices. |
| cellgeni/cellbender/removebackground_v02 | Process | cellbender cellbender-0.2 single-cell RNA-seq ambient RNA empty droplets artifact removal | Removes ambient RNA and empty droplet artifacts from single-cell RNA-seq data using CellBender 0.2 (0.2.2), producing a per-sample output directory with filtered count matrices. |
| cellgeni/cellbender/removebackground_v03 | Process | cellbender cellbender-0.3 single-cell RNA-seq ambient RNA empty droplets artifact removal | Removes ambient RNA and empty droplet artifacts from single-cell RNA-seq data using CellBender 0.3 (0.3.2), producing a per-sample output directory with filtered count matrices. |
| nf-core/h5ad_removebackground_barcodes_cellbender_anndata | Workflow | scdownstream cellbender anndata | Use cellbender for empty droplet removal |