Nextflow Modules
Showing module(s) with keyword "RNA-seq"
| Module | Keywords | Description |
|---|---|---|
| nf-core/arcashla/extract | HLA genotype RNA-seq | Extracts reads mapped to chromosome 6 and any HLA decoys or chromosome 6 alternates. |
| nf-core/fusioninspector | fusioninspector fusion RNA-seq fastq | Validation of Fusion Transcript Predictions |
| nf-core/fusionreport/detect | sort RNA-seq fusion report detect | fusionreport_detect |
| nf-core/fusionreport/download | sort RNA-seq fusion_report download | Build DB for fusionreport |
| nf-core/immunedeconv | Immune Deconvolution RNA-seq Bioinformatics Tools Computational Immunology | Perform immune cell deconvolution using RNA-seq data and various computational methods. |
| nf-core/regtools/junctionsextract | regtools leafcutter RNA-seq splicing | Extract exon-exon junctions from an RNAseq BAM file. The output is a BED file in the BED12 format. |