Nextflow Modules
Showing module(s) with keyword "cfDNA"
| Module | Keywords | Description |
|---|---|---|
| nf-core/ichorcna/createpon | ichorcna cnv cna cfDNA wgs panel_of_normals | ichorCNA is an R package for calculating copy number alteration from (low-pass) whole genome sequencing, particularly for use in cell-free DNA. This module generates a panel of normals |
| nf-core/ichorcna/run | ichorcna cnv cna cfDNA wgs | ichorCNA is an R package for calculating copy number alteration from (low-pass) whole genome sequencing, particularly for use in cell-free DNA |
| nf-core/msisensor2/msi | msi microsatellite microsatellite instability tumor cfDNA | msisensor2 detection of MSI regions. |