Nextflow Modules
Showing module(s) with keyword "tumor"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/msisensor2/msi | Process | msi microsatellite microsatellite instability tumor cfDNA | msisensor2 detection of MSI regions. |
| nf-core/parabricks/deepsomatic | Process | variant somatic vcf deepsomatic tumor normal | NVIDIA Clara Parabricks GPU-accelerated somatic variant calling, replicating deepsomatic. |
| nf-core/tmb/pytmb | Process | tumor mutation burden score | This module calculates Tumor Mutational Burden (TMB) scores from VCF files using the pyTMB tool. |