Nextflow Modules
Showing module(s) with keyword "glimpse"
| Module | Keywords | Description |
|---|---|---|
| nf-core/glimpse2/chunk | chunk low-coverage imputation glimpse | Defines chunks where to run imputation |
| nf-core/glimpse2/concordance | concordance low-coverage glimpse imputation | Program to compute the genotyping error rate at the sample or marker level. |
| nf-core/glimpse2/ligate | ligate low-coverage glimpse imputation | Ligatation of multiple phased BCF/VCF files into a single whole chromosome file. GLIMPSE2 is run in chunks that are ligated into chromosome-wide files maintaining the phasing. |
| nf-core/glimpse2/phase | phasing low-coverage imputation glimpse | Tool for imputation and phasing from vcf file or directly from bam files. |
| nf-core/glimpse/concordance | concordance low-coverage glimpse imputation | Compute the r2 correlation between imputed dosages (in MAF bins) and highly-confident genotype calls from the high-coverage dataset. |
| nf-core/glimpse/ligate | ligate low-coverage glimpse imputation | Concatenates imputation chunks in a single VCF/BCF file ligating phased information. |
| nf-core/glimpse/phase | phase imputation low-coverage glimpse | main GLIMPSE algorithm, performs phasing and imputation refining genotype likelihoods |