Nextflow Modules
Showing module(s) with keyword "copy number variation"
| Module | Keywords | Description |
|---|---|---|
| nf-core/dragen/germline | check fingerprint copy number variation fastqc genomics germline quality control repeat expansion detection structural variation trimming variable number tandem repeat detection variant annotation variant calling variant deduplication | The DRAGEN DNA Germline Pipeline accelerates the secondary analysis of NGS data by harnessing the tremendous power available on the DRAGEN Platform. The pipeline includes highly optimized algorithms for mapping, aligning, sorting, duplicate marking, and haplotype variant calling. In addition to haplotype variant calling, the pipeline supports calling of copy number and structural variants as well as detection of repeat expansions and targeted calls. |
| nf-core/hificnv | copy number variation cnv PacBio HiFi long reads structural variation | Copy number variant calling from PacBio HiFi reads |
| nf-core/wisecondorx/predict | copy number variation bed npz png | Find copy number aberrations |