Nextflow Modules
Showing module(s) with keyword "fastqc"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/dragen/germline | Process | check fingerprint copy number variation fastqc genomics germline quality control repeat expansion detection structural variation trimming variable number tandem repeat detection variant annotation variant calling variant deduplication | The DRAGEN DNA Germline Pipeline accelerates the secondary analysis of NGS data by harnessing the tremendous power available on the DRAGEN Platform. The pipeline includes highly optimized algorithms for mapping, aligning, sorting, duplicate marking, and haplotype variant calling. In addition to haplotype variant calling, the pipeline supports calling of copy number and structural variants as well as detection of repeat expansions and targeted calls. |
| nf-core/fastq_fastqc_umitools_fastp | Workflow | fastq fastqc qc UMI trimming fastp | Read QC, UMI extraction and trimming |
| nf-core/fastq_fastqc_umitools_trimgalore | Workflow | fastq fastqc qc UMI trimming trimgalore | Read QC, UMI extraction and trimming |
| nf-core/fastq_qc_stats | Workflow | fastq qc fastqc seqfu seqkit seqtk | Generate statistics for short read sequencing data using multiple tools |