Nextflow Modules
Showing module(s) with keyword "dexseq"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/dexseq/count | Process | dexseq exon count alternative splicing differential exon usage | Count the reads overlapping the exonic counting bins of a DEXSeq annotation |
| nf-core/dexseq/dtu | Process | dexseq transcript differential transcript usage alternative splicing rna-seq | Test a contrast for differential transcript usage with DEXSeq, from a table of transcript counts |
| nf-core/dexseq/exon | Process | dexseq exon differential exon usage alternative splicing rna-seq | Test a contrast for differential exon usage with DEXSeq, from the exon counts of dexseq/count |
| nf-core/dexseq/prepareannotation | Process | dexseq exon annotation gtf alternative splicing differential exon usage | Flatten a GTF annotation into the exonic counting bins used by DEXSeq |