Nextflow Modules
Showing module(s) with keyword "fungal"
| Module | Keywords | Description |
|---|---|---|
| nf-core/fungtion/downloadmodels | fungal effector protein prediction language model deep learning model download | Downloads the pretrained ESM-1b weights (esm1b_t33_650M_UR50S.pt) that fungtion uses for fungal effector prediction into a local models/ directory via `fungtion setup-models`. The downloaded directory is used as input to the FUNGTION_FUNGTION prediction module. |
| nf-core/fungtion/fungtion | fungal effector protein prediction language model deep learning svm classification | Predicts fungal effector proteins from protein FASTA sequences using ESM-1b protein language model embeddings and R-based SVM models. Optionally produces similarity-network and relationship-tree visualizations and an HTML report for predicted effectors. Requires the pretrained ESM-1b weights from FUNGTION_DOWNLOADMODELS as input. |