Nextflow Modules
Showing module(s) with keyword "svm"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/fungtion/fungtion | Process | fungal effector protein prediction language model deep learning svm classification | Predicts fungal effector proteins from protein FASTA sequences using ESM-1b protein language model embeddings and R-based SVM models. Optionally produces similarity-network and relationship-tree visualizations and an HTML report for predicted effectors. Requires the pretrained ESM-1b weights from FUNGTION_DOWNLOADMODELS as input. |