Nextflow Modules
Showing module(s) with keyword "haplotypecaller"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/gatk4/haplotypecaller | Process | gatk4 haplotype haplotypecaller | Call germline SNPs and indels via local re-assembly of haplotypes |
| nf-core/parabricks/deepvariant | Process | variant deep variant vcf haplotypecaller germline | NVIDIA Clara Parabricks GPU-accelerated germline variant calling, replicating deepvariant. |
| nf-core/parabricks/haplotypecaller | Process | variant vcf haplotypecaller germline | NVIDIA Clara Parabricks GPU-accelerated germline variant calling, replicating GATK haplotypecaller. |
| nf-core/sentieon/haplotyper | Process | sentieon haplotypecaller haplotype | Runs Sentieon's haplotyper for germline variant calling. |