Nextflow Modules
Showing module(s) with keyword "happy"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/happy/ftxpy | Process | happy featuretable somatic extraction | Somatic VCF Feature Extraction tool from hap.y. |
| nf-core/happy/happy | Process | happy benchmark haplotype validation | Hap.py is a tool to compare diploid genotypes at haplotype level. Rather than comparing VCF records row by row, hap.py will generate and match alternate sequences in a superlocus. A superlocus is a small region of the genome (sized between 1 and around 1000 bp) that contains one or more variants. |
| nf-core/happy/prepy | Process | happy benchmark haplotype | Pre.py is a preprocessing tool made to preprocess VCF files for Hap.py |
| nf-core/happy/report | Process | happy benchmark report html variant-calling | Generate standalone HTML benchmarking reports from GA4GH / hap.py variant-calling metrics CSVs |
| nf-core/happy/sompy | Process | happy sompy benchmark haplotype validation somatic variants | Hap.py is a tool to compare diploid genotypes at haplotype level. som.py is a part of hap.py compares somatic variations. |