Nextflow Modules
Showing module(s) with keyword "benchmark"
| Module | Keywords | Description |
|---|---|---|
| nf-core/happy/happy | happy benchmark haplotype validation | Hap.py is a tool to compare diploid genotypes at haplotype level. Rather than comparing VCF records row by row, hap.py will generate and match alternate sequences in a superlocus. A superlocus is a small region of the genome (sized between 1 and around 1000 bp) that contains one or more variants. |
| nf-core/happy/prepy | happy benchmark haplotype | Pre.py is a preprocessing tool made to preprocess VCF files for Hap.py |
| nf-core/happy/sompy | happy sompy benchmark haplotype validation somatic variants | Hap.py is a tool to compare diploid genotypes at haplotype level. som.py is a part of hap.py compares somatic variations. |
| nf-core/truvari/bench | structural variants sv vcf benchmark comparison | Given baseline and comparison sets of variants, calculate the recall/precision/f-measure |
| nf-core/truvari/segment | structural variants sv vcf benchmark normalization | Normalization of SVs into disjointed genomic regions |