Nextflow Modules
Showing module(s) with keyword "insert size"
| Module | Keywords | Description |
|---|---|---|
| nf-core/riker/multi | bam qc metrics multi alignment insert size gc bias coverage | Run multiple riker collectors in a single BAM pass using riker multi. Specify tools via ext.args (e.g. '--tools alignment basic isize'). The wgs and gcbias tools require a reference FASTA; the hybcap tool requires baits and targets. |
| nf-core/samtools/fixmate | fixmate samtools insert size repair bam paired read pairs | Samtools fixmate is a tool that can fill in information (insert size, cigar, mapq) about paired end reads onto the corresponding other read. Also has options to remove secondary/unmapped alignments and recalculate whether reads are proper pairs. |