Nextflow Modules
Showing module(s) with keyword "msa"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/clustalo/guidetree | Process | guide tree msa newick | Renders a guidetree in clustalo |
| nf-core/famsa/guidetree | Process | guide tree msa newick | Renders a guidetree in famsa |
| nf-core/hmmer/eslalipid | Process | alignment msa pairwise identity sequence comparison hmmer easel | Calculate pairwise percent identity for all sequence pairs in a multiple sequence alignment |
| nf-core/mafft_align | Workflow | msa mafft align | Prepare channels for running MAFFT/align |
| nf-core/mafft/align | Process | fasta msa multiple sequence alignment | Multiple sequence alignment using MAFFT |
| nf-core/mafft/guidetree | Process | fasta msa guide tree | Guide tree rendering using MAFFT |
| nf-core/muscle | Process | msa multiple sequence alignment phylogeny | MUSCLE is a program for creating multiple alignments of amino acid or nucleotide sequences. A range of options are provided that give you the choice of optimizing accuracy, speed, or some compromise between the two |
| nf-core/muscle5/super5 | Process | align msa multiple sequence alignment | Muscle is a program for creating multiple alignments of amino acid or nucleotide sequences. This particular module uses the super5 algorithm for very big alignments. It can permutate the guide tree according to a set of flags. |