Nextflow Modules
Showing module(s) with keyword "protein families"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/mgnifam/generatefamilies | Process | protein families hidden markov model profile hmm clustering sequence alignment metagenomics hmmer protein sequences | Iteratively builds protein family HMM profiles from MMseqs2 sequence clusters and expands them against a protein database |
| nf-core/mgnifam/updatefamilies | Process | protein families family update database update hidden markov model profile hmm sequence alignment metagenomics hmmer protein sequences | Refreshes existing protein family HMM profiles against a new sequence database, keeping each family's name stable across releases |
| nf-core/traitar/run | Process | phenotype prediction microbial traits genomics protein families | Traitar3 - predict microbial phenotypes from genomic sequences using protein families |