Nextflow Modules
Showing module(s) with keyword "rastair"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bam_taps_conversion | Workflow | TAPS conversion Methylation analysis Molecular bias (MBIAS) mCtoT rastair 4-letter genome | Uses rastair to assess C->T conversion as a readout for methylation in a genome-wide basis |
| nf-core/rastair/call | Process | methylation rastair C->T conversion bisulphite bisulfite bam mCtoT | Assess positive C->T conversion as a readout for methylation on a genome-wide basis |
| nf-core/rastair/mbias | Process | methylation rastair C->T conversion bisulphite bisulfite bam mCtoT mbias methylation bias | Assess C->T conversion as a readout for methylation on a per-read-position basis. |
| nf-core/rastair/mbiasparser | Process | methylation rastair C->T conversion bisulphite bisulfite bam mCtoT mbias methylation bias mbiasparser cutoff | Parses Rastair mbias output to assess the ideal cutoff for read trimming and reports the values. |
| nf-core/rastair/methylkit | Process | methylation rastair C->T conversion bisulphite bisulfite mCtoT methylkit convert parser | Parses rastair call output and converts it into a MethylKit-compatible format. |