Nextflow Modules
Showing module(s) with keyword "read depth"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/cnvkit/coverage | Process | cnvkit coverage BAM CRAM bedGraph read depth genomics | Calculate coverage in the given regions from BAM/CRAM or bedGraph files read depths. |
| nf-core/cnvpytor/histogram | Process | cnv calling histogram read depth | calculates read depth histograms |
| nf-core/cnvpytor/importreaddepth | Process | read depth cnv cna call | command line tool for CNV/CNA analysis. This step imports the read depth data into a root pytor file. |
| nf-core/purgedups/pbcstat | Process | sort genome assembly purge duplications read depth | Create read depth histogram and base-level read depth for an assembly based on pacbio data |