Nextflow Modules
Showing module(s) with keyword "bedGraph"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bedtools/unionbedg | Process | bed unionBedGraphs bedGraph comparisons combine | Combines multiple BedGraph files into a single file |
| nf-core/bismark/coverage2cytosine | Process | bismark consensus map methylation 5mC methylseq bisulphite bisulfite bam bedGraph | Relates methylation calls back to genomic cytosine contexts. |
| nf-core/bismark/methylationextractor | Process | bismark consensus map methylation 5mC methylseq bisulphite bisulfite bam bedGraph | Extracts methylation information for individual cytosines from alignments. |
| nf-core/cnvkit/coverage | Process | cnvkit coverage BAM CRAM bedGraph read depth genomics | Calculate coverage in the given regions from BAM/CRAM or bedGraph files read depths. |
| nf-core/homer/makeucscfile | Process | peaks bed bedGraph | Create a UCSC bed graph with the HOMER suite |
| nf-core/methyldackel/extract | Process | methylation 5mC methylseq bisulphite bisulfite consensus bedGraph bam cram | Extracts per-base methylation metrics from alignments |
| nf-core/ucsc/bigwigaverageoverbed | Process | bigwig bedGraph ucsc | compute average score of bigwig over bed file |