|
nf-core/bedtools/unionbedg
|
bed
unionBedGraphs
bedGraph
comparisons
combine
|
Combines multiple BedGraph files into a single file
|
|
nf-core/bismark/coverage2cytosine
|
bismark
consensus
map
methylation
5mC
methylseq
bisulphite
bisulfite
bam
bedGraph
|
Relates methylation calls back to genomic cytosine contexts.
|
|
nf-core/bismark/methylationextractor
|
bismark
consensus
map
methylation
5mC
methylseq
bisulphite
bisulfite
bam
bedGraph
|
Extracts methylation information for individual cytosines from alignments.
|
|
nf-core/cnvkit/coverage
|
cnvkit
coverage
BAM
CRAM
bedGraph
read depth
genomics
|
Calculate coverage in the given regions from BAM/CRAM or bedGraph files read depths.
|
|
nf-core/homer/makeucscfile
|
peaks
bed
bedGraph
|
Create a UCSC bed graph with the HOMER suite
|
|
nf-core/methyldackel/extract
|
methylation
5mC
methylseq
bisulphite
bisulfite
consensus
bedGraph
bam
cram
|
Extracts per-base methylation metrics from alignments
|
|
nf-core/ucsc/bigwigaverageoverbed
|
bigwig
bedGraph
ucsc
|
compute average score of bigwig over bed file
|