Nextflow Modules
Showing module(s) with keyword "single cell"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/cellsnp/modea | Process | genotyping single cell SNP droplet based single cells | Cellsnp-lite is a C/C++ tool for efficient genotyping bi-allelic SNPs on single cells. You can use the mode A of cellsnp-lite after read alignment to obtain the snp x cell pileup UMI or read count matrices for each alleles of given or detected SNPs for droplet based single cell data. |
| nf-core/popscle/demuxlet | Process | popscle demultiplexing genotype-based deconvoltion single cell | Software to deconvolute sample identity and identify multiplets when multiple samples are pooled by barcoded single cell sequencing and external genotyping data for each sample is available. |
| nf-core/popscle/dscpileup | Process | popscle demultiplexing genotype-based deconvoltion single cell pile up | Software to pileup reads and corresponding base quality for each overlapping SNPs and each barcode. |
| nf-core/popscle/freemuxlet | Process | popscle demultiplexing genotype-based deconvoltion single cell | Software to deconvolute sample identity and identify multiplets when multiple samples are pooled by barcoded single cell sequencing and external genotyping data for each sample is not available. |
| nf-core/scimap/mcmicro | Process | sort spatial single cell | SCIMAP is a suite of tools that enables spatial single-cell analyses |