Nextflow Modules
Showing module(s) with keyword "demultiplexing"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bff | Process | demultiplexing hashing-based deconvolution single-cell | Generating cell hashing calls from a matrix of count data. |
| nf-core/demuxem | Process | demultiplexing hashing-based deconvoltion single-cell | Demultiplexing cell nucleus hashing data, using the estimated antibody background probability. |
| nf-core/gmmdemux | Process | demultiplexing hashing-based deconvolution single-cell | GMM-Demux is a Gaussian-Mixture-Model-based software for processing sample barcoding data (cell hashing and MULTI-seq). |
| nf-core/hasheddrops | Process | demultiplexing hashing-based deconvolution single-cell | Generating cell hashing calls from a matrix of count data. |
| nf-core/htodemux | Process | demultiplexing hashing-based deconvolution single-cell | Demultiplex samples based on data from cell hashing. |
| nf-core/multiseqdemux | Process | demultiplexing hashing-based deconvolution single-cell | Identify singlets, doublets and negative cells from multiplexing experiments. Annotate singlets by tags. |
| nf-core/popscle/demuxlet | Process | popscle demultiplexing genotype-based deconvoltion single cell | Software to deconvolute sample identity and identify multiplets when multiple samples are pooled by barcoded single cell sequencing and external genotyping data for each sample is available. |
| nf-core/popscle/dscpileup | Process | popscle demultiplexing genotype-based deconvoltion single cell pile up | Software to pileup reads and corresponding base quality for each overlapping SNPs and each barcode. |
| nf-core/popscle/freemuxlet | Process | popscle demultiplexing genotype-based deconvoltion single cell | Software to deconvolute sample identity and identify multiplets when multiple samples are pooled by barcoded single cell sequencing and external genotyping data for each sample is not available. |
| nf-core/porechop/porechop | Process | adapter nanopore demultiplexing | Adapter removal and demultiplexing of Oxford Nanopore reads |
| nf-core/samplesheetparser/validate | Process | illumina samplesheet validation demultiplexing bclconvert bcl2fastq genomics | Validate an Illumina SampleSheet.csv (V1 or V2) for index, adapter, and structural issues. Format is auto-detected. Exits 0 if valid, 1 if errors are found — causing the pipeline to fail early with a clear message rather than discovering demultiplexing problems downstream. |
| nf-core/scanpy/hashsolo | Process | anndata single-cell hashing demultiplexing scanpy | Probabilistic demultiplexing of cell hashing data |