Nextflow Modules
Showing module(s) with keyword "demultiplexing"
| Module | Keywords | Description |
|---|---|---|
| nf-core/bff | demultiplexing hashing-based deconvolution single-cell | Generating cell hashing calls from a matrix of count data. |
| nf-core/demuxem | demultiplexing hashing-based deconvoltion single-cell | Demultiplexing cell nucleus hashing data, using the estimated antibody background probability. |
| nf-core/gmmdemux | demultiplexing hashing-based deconvolution single-cell | GMM-Demux is a Gaussian-Mixture-Model-based software for processing sample barcoding data (cell hashing and MULTI-seq). |
| nf-core/hasheddrops | demultiplexing hashing-based deconvolution single-cell | Generating cell hashing calls from a matrix of count data. |
| nf-core/htodemux | demultiplexing hashing-based deconvolution single-cell | Demultiplex samples based on data from cell hashing. |
| nf-core/multiseqdemux | demultiplexing hashing-based deconvolution single-cell | Identify singlets, doublets and negative cells from multiplexing experiments. Annotate singlets by tags. |
| nf-core/popscle/demuxlet | popscle demultiplexing genotype-based deconvoltion single cell | Software to deconvolute sample identity and identify multiplets when multiple samples are pooled by barcoded single cell sequencing and external genotyping data for each sample is available. |
| nf-core/popscle/dscpileup | popscle demultiplexing genotype-based deconvoltion single cell pile up | Software to pileup reads and corresponding base quality for each overlapping SNPs and each barcode. |
| nf-core/popscle/freemuxlet | popscle demultiplexing genotype-based deconvoltion single cell | Software to deconvolute sample identity and identify multiplets when multiple samples are pooled by barcoded single cell sequencing and external genotyping data for each sample is not available. |
| nf-core/porechop/porechop | adapter nanopore demultiplexing | Adapter removal and demultiplexing of Oxford Nanopore reads |
| nf-core/scanpy/hashsolo | anndata single-cell hashing demultiplexing scanpy | Probabilistic demultiplexing of cell hashing data |